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- CViT - blast - |
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| Blast against pseudomolecule:
MT3.0
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- Blast a fasta-format sequence or set of sequences against the current Medicago truncatula pseudomolecule.
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- To do the blast, choose a blast program and e-value, then paste your FASTA sequences.
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- For testing, here are some nucleotide
and peptide sequences.
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| About the result: |
- The results page will show two views of the hit positions on the pseudomolecule:
a large, zoomed in view and a smaller whole-genome view.
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- Each dot represents a Blast HSP below the specified E-value.
Several HSPs may correspond to one query sequence,
so two dots don't necessarily indicate two independent matches of the same sequence.
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- The little gray and black lines on the chromosome images show the BAC borders.
Black lines indicate sequence gaps; gray lines indicate boundaries between
overlapping BACs (overlap has been removed in these cases).
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