These pictures show BACs in the 08-10-2007 pseudogenome build (release Mt2.0 assembly).
BACs in this build were frozen on 06-15-2007.

• BAC sequence contigs and scaffolds
• BACs by sequencing center
• Mapped BACs
• Bacs by phase


• To display other sets of BACs on the current build, use the CViT-BACs page.
• To query the location of nucleotide or amino acid sequencess in the build, use the CViT-Blast page.

BAC borders are shown on chromosomes. BAC and contig order has been determined using evidence in this order of preference: marker, then sequence overlap, then BAC end overlap (with at least 99% identity over 90% of length, and only for low-copy BAC end matches), then physical (FPC) map. In some cases, strong homology with sequenced regions of Lotus japonicus has also been used. Contigs and supercontigs have also been ordered where possible, using marker information. The MtChr0 "chromosome" consists of unordered BACs and sequence contigs whose positions have not yet been determined.

BAC sequence contigs, scaffolds, and centromeric boundaries

BAC borders within sequence contigs and larger scaffolds (supercontigs) are shown as follows:

• Light gray indicates BAC borders that are inside sequence contigs;
• black indicates "hard gaps" of unknown size.

Approximate centromeric boundaries are flanked by red lines. Candidate flanking BACs:

1. AC151619 AC135959
2. AC124609 AC146756
3. AC147201 AC147407
4. AC145289 AC119416
5. AC135848 AC135101/AC140031
6. AC135464 AC138199
7. AC121242 AC124215
8. AC147006 AC146723

BACs By Sequencing Center

Shows BACs sequenced by center:

	University of Oklahoma
	TIGR
	Genoscope
	Sanger Institute
	"Other"

Mapped BACs

BAC borders are shown on chromosomes. Light gray indicates BAC borders that are inside contigs; black BACs are on edges of contigs. The lines between BACs indicate gaps of unknown length.

	BACs mapping to one chromosome
	BACs mapping to multiple chromosomes

Phase 1, 2, and 3 BACs

	Phase 1 BACs (unordered pieces)
	Phase 2 BACs (ordered and oriented pieces)
	Phase 3 BACs (complete)

Medicago Baby Picture

(actually Medicago lupinula; courtesy of PNW Weed Management Handbook).